rs27597819 SNP Detail

Summary

• ID
  rs27597819
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137183612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC CCAGCATTCT TTTGCCCTTA
  K
  AAGCAACAGT GACCTGCTGA AGCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37772354	NES09135098	PERLEGEN	MM_PANEL2	f	SNP		G	G	T	T	T	T	T		T	G		G
ss45715296	mCV22550002	ABI	CRAMUS_MOUSE	f	SNP		G				T
ss147607092	ENSMUSSNP6116084	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				T
ss321364040	CHEV_4_137012216	CHEVERUD	SCREENING_POP	f	SNP									T			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27597819					SNP	G	G	G	T	T	T	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772354	NES09135098	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137183612 () rs orientation: forward

Symbol	Name	Function Class
1700013G24Rik	RIKEN cDNA 1700013G24 gene	840 bp downstream
Gm13010	predicted gene 13010	within coordinates
Rr602623	regulatory region 602623	1045 bp proximal
Tssr39748	transcription start site region 39748	1695 bp downstream
Tssr39749	transcription start site region 39749	1529 bp downstream
Tssr39750	transcription start site region 39750	1517 bp downstream