rs27597816 SNP Detail

Summary

• ID
  rs27597816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137184080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT AGAAACGCTC ACCTCCAAAA
  Y
  GATCCAGTTT CCTTGAACTG GAGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37772351	NES09135101	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	C	C	C		T	T	C	C		C
ss147607119	ENSMUSSNP6129829	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss321364046	CHEV_4_137012684	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27597816					SNP	T	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772351	NES09135101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137184080 () rs orientation: forward

Symbol	Name	Function Class
1700013G24Rik	RIKEN cDNA 1700013G24 gene	1308 bp downstream
Gm13010	predicted gene 13010	within coordinates
Rr602623	regulatory region 602623	577 bp proximal
Rr602624	regulatory region 602624	1617 bp proximal
Tssr39749	transcription start site region 39749	1997 bp downstream
Tssr39750	transcription start site region 39750	1985 bp downstream