rs27596890 SNP Detail

Summary

• ID
  rs27596890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145191868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCACAGGAT AAAAAATGAA AAAATCTAAG TTGTCAGAAA
  TAGAGAATTC AAGACTACAA ATCGGCTGTT GCTAACAGGG ACGCCTCTTC AGAACAACCT
  R
  CATGAGCTCT GGTCACTTCT AAACTTTTTG TTACCAGATG TATGACTTTG ATTCAGCTGA
  TGACTTTGAT TCCTGGTTTG ATACAAATAA TTGCCTTGGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37798808	NES09115859	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G
ss37807409	NES09113190	PERLEGEN	MM_PANEL2	f	SNP	G	G		A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27596890					SNP	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37798808	NES09115859	PERLEGEN	MM_PANEL	f	SNP	A/G
ss37807409	NES09113190	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145191868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	1015 bp distal
Gm65281	predicted gene, 65281	within coordinates
Gm70672	predicted gene, 70672	1541 bp upstream
Rr377358	regulatory region 377358	511 bp downstream
Rr604377	regulatory region 604377	1084 bp distal
Rr604378	regulatory region 604378	897 bp distal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	within coordinates