rs27596870 SNP Detail

Summary

• ID
  rs27596870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145192948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGATCAG AACCTGAACA
  AAATTGGGAA AGATGAAATG CTTCAAATGA TTCGACGTGG TGCCACACAT GTGTTTGCTT
  CAAAAGAAAG TGAAATCACT GATGAGGATA TTGATGGTAT TTTAGAAAGA GGTGCAAAGA
  AGACTGCAGA AATGAATGAA AAGCTGTCCA AGATGGGTGA AAGTTCACTT AGAAACTTTA
  Y
  GATGGATACA GAGTCCAGTG TTTATTACTT TGAAGGAGAA GACTATAGAG AAAAACAAAA
  GATTGCATTC ACAGAGTGGA TTGAACCACC AAAAAGAGAA AGAAAAGCCA ACTATGCTGT
  TGATGCATAT TTCAGGGAAG CTCTCCGTGT TAGCCTAAAG CACCCAAGGC ACCTCGACCT
  CCAAAACAAC CAAATGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37798791	NES09115876	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	T	C	T	T	T	T	T	T
ss37807389	NES09113212	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	T	C	T	T	T	T	T	T
ss147859649	ENSMUSSNP4766144	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27596870					SNP	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37798791	NES09115876	PERLEGEN	MM_PANEL	f	SNP	C/T
ss37807389	NES09113212	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145192948 () rs orientation: forward

Symbol	Name	Function Class
Gm65281	predicted gene, 65281	891 bp downstream
Gm70672	predicted gene, 70672	461 bp upstream
Rr377358	regulatory region 377358	1591 bp downstream
Rr604378	regulatory region 604378	1977 bp distal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	within coordinates