rs27596640 SNP Detail

Summary

• ID
  rs27596640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142753788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAATGTT CTTCCCAAAA
  ATCCACCTGG CTTCCTTCTC CGAAACCCTA AGTGTGGGGC ACACAGTAGG ACAGGGGAAC
  ATATCTCCTT TGTGTGTCGA TCACTCCAAC ATAGAAATTT TGATCCCAAG TTTGGACCAA
  GTTATCATCA GAATTGTTGA GAAGAGGCAG GACAGGGAGT CCTAACTTAC ACCATTGAAG
  R
  TATAAACTGA AGTTTCCTCT GTATTGTCGG GCCTCGGAGG AGCTAGCAAC AAAATCCTCT
  GACACATGTC CAGCCATTAG CCAACACCTG CAAATCCATG TGTGGAGCTA CACCCTTCCG
  AGTGTACTCA AGGGCTCACA AAGACCCAGA GCAGCCCTGA GAGAAGCCCA GCTGGCTTGA
  GAAACAACCT GGACTGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37795459	NES09128328	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G	G	G	G	A
ss147767911	ENSMUSSNP6921555	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27596640					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37795459	NES09128328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142753788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6330411D24Rik	RIKEN cDNA 6330411D24 gene			Intron
				Noncoding-Transcript-Variant
Rr604143	regulatory region 604143			within coordinates
Rr604144	regulatory region 604144			231 bp proximal
Rr604145	regulatory region 604145			435 bp proximal