rs27596046 SNP Detail

Summary

• ID
  rs27596046
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137858961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA GTTGTCGGTT TTCTTGGTTT
  K
  GTTTTGTTTT GGCTGGGGTT AGGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37769383	NES09140333	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	T		G		G	G		G
ss147633744	ENSMUSSNP2528617	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
ss321370701	CHEV_4_137687565	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27596046					SNP	T	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769383	NES09140333	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137858961 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Rr602841	regulatory region 602841	1563 bp distal
Rr602842	regulatory region 602842	1376 bp distal
Rr602843	regulatory region 602843	115 bp distal