rs27596045 SNP Detail

Summary

• ID
  rs27596045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137859018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA AGCTGGAGCG CCGTGTGTGG
  Y
  ACTCACATTG GAGCCTGCCT ACCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37769382	NES09140334	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	T		C	C	T	T		T
ss147633748	ENSMUSSNP3119913	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss321370702	CHEV_4_137687622	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27596045					SNP	C	C	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769382	NES09140334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137859018 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Rr602841	regulatory region 602841	1620 bp distal
Rr602842	regulatory region 602842	1433 bp distal
Rr602843	regulatory region 602843	172 bp distal