rs27595692 SNP Detail

Summary

• ID
  rs27595692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138110400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTTTTGT GAAAATAAAC TGCAAAACCT GTATCGTGTG
  CTGGGGGGGG GGCGTTGTGG CGCGGAGAGC GGGGACAGGC TGTAATATCA ACTGTGTAGG
  Y
  GTGTGCGTGT TGCGGTATGG CAGAATGGGA CATCAGCCTT GGCTGGGGGT AGGGCACTCA
  CTTTTTCTTA TATATTTGCT ATTTCTCTTT TTTCATGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37768323	NES09143162	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	C	T	C	T		C	C	T	T
ss45654858	mCV23410304	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss321372979	CHEV_4_137939004	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27595692					SNP	C	C	T	C	T	C	T	C	T	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768323	NES09143162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138110400 () rs orientation: forward

Symbol	Name	Function Class
Rr602903	regulatory region 602903	418 bp distal
Rr602904	regulatory region 602904	631 bp proximal