rs27595162 SNP Detail

Summary

• ID
  rs27595162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139423671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCAACA GCTGGATGTG
  TTGGTTTGAT GGACAACTGT TAGAAGATCA ACTTCCTAAG ACTGCGTCAG TGTGATGGGT
  GGGCAAGGTT GGGATGCCTC AGGTTGGGAT AGGACTCTCT ACCCAGTGGC TCCTCCTTTA
  GCCCCAAAGG TCTTGTCACC TCTTTCAGCA CCTTCCCAAG GTATGCCTTA GGCTAAGACC
  Y
  TTATCCACTC TCCTTCTGGG CTCCTGGGAC AGGGAAAGGG AAAACCTAAC TTCTGGGGGA
  TAGGAGGTCA AGTCTCTAAT GGGCCATGTA GTCTATCTGT GCCTCAGTGT CCCTACAGGT
  AAGTGGGTAT TGTCCTAAAT ACCTCAGAGA ACAGGTCATC GGGAAGCGCC TAGTCAGACT
  CAAGGACTCA GCTTTAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37792482	NES09134202	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27595162					SNP	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792482	NES09134202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139423671 () rs orientation: forward

Symbol	Name	Function Class
Rr603286	regulatory region 603286	1343 bp proximal