rs27595154 SNP Detail

Summary

• ID
  rs27595154
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139425588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCCCCC CTCCCCCCAG
  TTCCAAAGAG GGAGGAGCCA GCGCTGGCCT CAGAGGGCTT TCATCCTAAA AGCATGTGGT
  TAAGGTCAGC GACAGTGTGG ATTGTAGTAG CCCTAGTGGT GAGGGGAAGA GCATACTGGC
  CTGAGGAAAA ATATGGGGGA AGGTTCTGAG GCCTGGCAGG AAAGTATCTT CCTGAGAAAA
  W
  TTGTTGGGTG TAGGGAAGAT TTGTCGGGAG AAAATCGGGG GAAGCTTGGG GGCTGCGTCA
  TTGGATGGAG CCTTTCTCGG GGACAGCAAG GGACAGTTAC TGCAGCAGAG GGACACGGTC
  AGATCGGCAG GCTGTGAGGG CCTCTGTGTC TCGTGTGGTT CATCTCATAA CACCCCAGCC
  TACTGTGCAG CTTCGTTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37792474	NES09134091	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27595154					SNP	T	T	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792474	NES09134091	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139425588 () rs orientation: forward

Symbol	Name	Function Class
Rr603286	regulatory region 603286	32 bp distal
Rr603287	regulatory region 603287	367 bp proximal