rs27592243 SNP Detail

Summary

• ID
  rs27592243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140473601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCA CCTCCTCCTC CAGGCAGCAG
  Y
  GGCCATCGAT GATGGGCCCA AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37788565	NES09123122	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27592243					SNP	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788565	NES09123122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140473601 () rs orientation: forward

Symbol	Name	Function Class
Gm69576	predicted gene, 69576	1835 bp upstream
Padi4	peptidyl arginine deiminase, type IV	Coding-NonSynonymous
Rr603536	regulatory region 603536	1313 bp distal
Rr603537	regulatory region 603537	1419 bp distal
Rr603538	regulatory region 603538	1476 bp proximal
Rr603539	regulatory region 603539	1603 bp proximal
Rr603540	regulatory region 603540	1823 bp proximal