rs27592235 SNP Detail

Summary

• ID
  rs27592235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140475212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAGCGA ATGCCACCGC
  AGAACACTTT GTCTATGGCC CGTGTCTGCT GGTCCCCTTA ACGCAGTATG GGAGACAAGA
  AGCAGCAGGG TAGAGCTGGT TTTGAAACCA GACCCTGGCT TTGCCATCCC TTGCCTGCTG
  TGTGTTTTTG TGTTAGACAC CTAATTTCTC TGAGCCTGCC TCTGGAAGGC AAAGCCACGA
  R
  AGAGGGCACT CCTGACATTG TGTGAGGCTC AGAAGAGGCT CTGGGTGCCG AGAGGGCTAT
  GTGAGCCTCA AAGGGCGCAC GGAAGTGCCA CCTGGACCTG CCTTATGCCT GGCCAGGCTG
  TGTCCTGCAG TTTAGGAGGT CATTTGAGTC AGAGGGAGTC AGGCGGTGGC TGTCACCTCC
  TTACCATGTT TGGGAAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788557	NES09123072	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27592235					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788557	NES09123072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140475212 () rs orientation: forward

Symbol	Name	Function Class
Gm69576	predicted gene, 69576	224 bp upstream
Padi4	peptidyl arginine deiminase, type IV	Intron
Rr603538	regulatory region 603538	within coordinates
Rr603539	regulatory region 603539	within coordinates
Rr603540	regulatory region 603540	212 bp proximal