rs27592234 SNP Detail

Summary

• ID
  rs27592234
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140475228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC ACGAGAGAGG GCACTCCTGA
  M
  ATTGTGTGAG GCTCAGAAGA GGCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788556	NES09123073	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	A	C	C		C	C	C	C	A	A
ss147711123	ENSMUSSNP1767875	ENSEMBL	ENSEMBL_Sanger	f	SNP							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27592234					SNP	C	C	A	A	C	C	A	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788556	NES09123073	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140475228 () rs orientation: forward

Symbol	Name	Function Class
Gm69576	predicted gene, 69576	208 bp upstream
Padi4	peptidyl arginine deiminase, type IV	Intron
Rr603538	regulatory region 603538	within coordinates
Rr603539	regulatory region 603539	3 bp distal
Rr603540	regulatory region 603540	196 bp proximal