rs27592233 SNP Detail

Summary

• ID
  rs27592233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140475234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTTTGT CTATGGCCCG
  TGTCTGCTGG TCCCCTTAAC GCAGTATGGG AGACAAGAAG CAGCAGGGTA GAGCTGGTTT
  TGAAACCAGA CCCTGGCTTT GCCATCCCTT GCCTGCTGTG TGTTTTTGTG TTAGACACCT
  AATTTCTCTG AGCCTGCCTC TGGAAGGCAA AGCCACGAGA GAGGGCACTC CTGACATTGT
  R
  TGAGGCTCAG AAGAGGCTCT GGGTGCCGAG AGGGCTATGT GAGCCTCAAA GGGCGCACGG
  AAGTGCCACC TGGACCTGCC TTATGCCTGG CCAGGCTGTG TCCTGCAGTT TAGGAGGTCA
  TTTGAGTCAG AGGGAGTCAG GCGGTGGCTG TCACCTCCTT ACCATGTTTG GGAAGAAGGC
  CTGGGCCTTA GAGTTCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788555	NES09123074	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27592233					SNP	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788555	NES09123074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140475234 () rs orientation: forward

Symbol	Name	Function Class
Gm69576	predicted gene, 69576	202 bp upstream
Padi4	peptidyl arginine deiminase, type IV	Intron
Rr603538	regulatory region 603538	within coordinates
Rr603539	regulatory region 603539	9 bp distal
Rr603540	regulatory region 603540	190 bp proximal