rs27592228 SNP Detail

Summary

• ID
  rs27592228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140475795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC ATAGGCATTC TGGTCTCTTA
  R
  TTTCTTGTTG GACAGAATTT CATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788550	NES09123079	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	A	G	A	G	A	A	A	G	G
ss45686169	mCV23066848	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss147711162	ENSMUSSNP5235648	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27592228					SNP	G	G	A	G	G	G	A	G	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788550	NES09123079	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140475795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15196	CpG island 15196	1886 bp proximal
Gm69576	predicted gene, 69576	within coordinates
Padi4	peptidyl arginine deiminase, type IV	Coding-Synonymous
Rr603538	regulatory region 603538	349 bp distal
Rr603539	regulatory region 603539	570 bp distal
Rr603540	regulatory region 603540	350 bp distal