rs27592221 SNP Detail

Summary

• ID
  rs27592221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140476260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGCTGGG TGACCCCACT
  GAGCCTCATG TGACAGGGAA CGAATGCGGA GGGTGACCTT CAAACAGGAC AAAGCCCCAA
  GTGGCAGAGA AGACAAGCTG CTTCCCGAGA CAGGATCCCG GCACAGTCAA CCAATTAGGC
  CAACAAAACC CATTCCAGTG CCAGCCCTTG ATCCAGCCAC ACCAACTGGG GAGGCCTCTG
  Y
  ACCAATCAAC AAGACTGCTA TGTCAATGTC CCTGGGAGGT GACACTGGAC ACCTGGATCA
  GACCCCTGGC TCAGGAGTGG CTTAGAAATG GACAGCTTTC TGGTGGTCTG CACTGTTTCC
  AATCCCAAGG CATTCGCCCT TGGTCTCAGA GCCTACTTAT TAATATTTTT ATTTTTTAAT
  ATTTTTATTT TATGTGCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788543	NES09123086	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27592221					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788543	NES09123086	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140476260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15196	CpG island 15196	1421 bp proximal
Gm69576	predicted gene, 69576	within coordinates
Padi4	peptidyl arginine deiminase, type IV	Intron
Rr367763	regulatory region 367763	1600 bp upstream
Rr603538	regulatory region 603538	814 bp distal
Rr603539	regulatory region 603539	1035 bp distal
Rr603540	regulatory region 603540	815 bp distal
Tssr1360	transcription start site region 1360	1565 bp downstream
Tssr44277	transcription start site region 44277	1597 bp downstream
Tssr44278	transcription start site region 44278	1620 bp downstream
Tssr44279	transcription start site region 44279	1653 bp downstream