rs27590935 SNP Detail

Summary

• ID
  rs27590935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142977104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT GTCAGTGTGC ATAGTAGGGA
  R
  ACTCAGGCAG CAGGGTGAGG AGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37794458	NES09122397	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A			G		G
ss45631081	mCV24626815	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		G
ss147777437	ENSMUSSNP3622687	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss321403465	CHEV_4_142840437	CHEVERUD	SCREENING_POP	f	SNP											A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27590935					SNP	G	G	A	A	A	G	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794458	NES09122397	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142977104 () rs orientation: forward

Symbol	Name	Function Class
Rr604179	regulatory region 604179	1966 bp proximal