rs27590919 SNP Detail

Summary

• ID
  rs27590919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142983824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAAGAA AAAATGAAGG
  GAAAAAGAAA AACAGCAACT CAGAAGAAAA AAAAAAGTAT TAATCATGTC ACCCGAGGGT
  AGCCAGAACA TCAAATCCTG ACTTGATAAT TAAAGGGAAT AAATGAAAGA AGACCCCTCC
  TGTTCCATGG GAACCGTAAT TGCCATTGTT GAATATTCCT ATTGGACAGG GAAAGCCTGA
  Y
  GTCACAGGCA AATCCCATCT GACAGAGCTG TAAGAGAAAC AAAAGCATTT CCTCAGATTA
  GGCTGACGCA GAGCTATATA GTAACAGTAA AAATAATGAT AAATAATAAT AATGATAACA
  CAACAGCAAC AAAATAACCA GTTAATGGGT CTGCCTGAAT CGGTGAGGGG CAGGCAGGAG
  AATGAGAACT CCAAGGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37794442	NES09122238	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	T
ss147777723	ENSMUSSNP6720623	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590919					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794442	NES09122238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142983824 () rs orientation: forward

Symbol	Name	Function Class
Rr604180	regulatory region 604180	1217 bp proximal
Rr604181	regulatory region 604181	1525 bp proximal