rs27590917 SNP Detail

Summary

• ID
  rs27590917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142984659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGAGAC ACAGAGAGAG
  ACAGACACAG AGACACAGAG CAACACAGAG AGACAGAAAG GGAGAGAGGC TGAGAGTCAC
  AGAGAGAAAC AGAGAGAGAC AGACAAAAAG AAAAAGAGGC AAAGAGAGAC ACACAGAGAC
  AGAGACAGAG ACAGAGACAG AGAAGTAGAA ATTTACAGTG GAGTCATCAT TCTGCCTTTT
  Y
  CCGCCCTGAA TGAGCCTAGC TTCACTCCAC GTGGATGGAG GTCTGGATGA GACGAATTGG
  AAACGGACAC ATAAGCAGGA TGTGTGTTCG TGCAAGGGGT ATTGAGCTTA TATGTCACTC
  AGTTTAAGTA GAAACAAGGG ACAAGCCAAC AAGATAAATG ACTCCAGAAC AAAATGGCAA
  ATGAATCTAA TGAATGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37794440	NES09122165	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	T	C	C	T
ss147777747	ENSMUSSNP742638	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590917					SNP	T	T	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794440	NES09122165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142984659 () rs orientation: forward

Symbol	Name	Function Class
Rr604180	regulatory region 604180	382 bp proximal
Rr604181	regulatory region 604181	690 bp proximal
Rr604182	regulatory region 604182	1645 bp proximal