rs27590907 SNP Detail

Summary

• ID
  rs27590907
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142986013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAGAGA TGAACCATCC
  TTAGATTTTG TTGAGAAAAA AAAAAAAAGG ACAAACACAA GAGAGGGAAA TATGAGACAT
  AAATGGCTGG AAGATTGTAC CCTCCTGCTT GTTCAGAAAA GGAGGAAGGA CCATCCACCC
  GGGTTAGAAA GCCTGCACTC TCCCTCAGGC ACTGCACCTG CCGTTCTAGG CTGATACCGG
  R
  CCAGGTCAGG TGGAAAATAA ACAGCTTCAC TTTGTCTACT TTGAGACTTC AGAGCTCTTA
  CTATGAAGTG AGGGTCTTTG TTTCCCACAA AGGCTGGATG TAGAGGGTTA GGTATGTGGA
  CAAGCCCAGC TCCCTGTGTT CTTTCTTTGT TTCTTTTCTT CTTTTTTTCT AAGATTTATT
  TGTTTATGTA TATGAGTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37794430	NES09122154	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27590907					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794430	NES09122154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142986013 () rs orientation: forward

Symbol	Name	Function Class
Rr604180	regulatory region 604180	354 bp distal
Rr604181	regulatory region 604181	643 bp distal
Rr604182	regulatory region 604182	291 bp proximal