rs27590899 SNP Detail

Summary

• ID
  rs27590899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142987359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATC CTGTCTGCTC TTAGATACCG
  Y
  GAGAATGAGA CACACAGTTC CTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss37794422	NES09122082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T		C
ss321403527	CHEV_4_142850692	CHEVERUD	SCREENING_POP	f	SNP						C		T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs27590899					SNP	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794422	NES09122082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142987359 () rs orientation: forward

Symbol	Name	Function Class
Rr377326	regulatory region 377326	1581 bp upstream
Rr604180	regulatory region 604180	1700 bp distal
Rr604181	regulatory region 604181	1989 bp distal
Rr604182	regulatory region 604182	513 bp distal