rs27590679 SNP Detail

Summary

• ID
  rs27590679
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140218259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTAGAG GTAAAGCTAC
  CGCTCTGAGC ATGGGATCCT GTCGCCGCCC GCCTTTCCAC TTTCCCAGGA AATTGAAAAA
  TCACCTGTTT TCAAATACTG ACTGCTAATT AAGACAAAAA TAATATTTAT GGGCACGCAC
  CACAGGCTCC TGTCTAGCTC CCAGCCTGGA AATGTTTGCT CTTAGAGAGC TGCCACAGAT
  S
  TATTTCAGTT TCTCCGGTGC CAGTCACCGC TGGCCAGTCT TCCCTCACAA CCTCAGGCTT
  CGGAGATGTG GTCAAAAGGC AGAGAACGTG GAAGCCCAGT GGGGATTTAG AAGCTGGAGT
  GCAGGCACTC ACTCCACAGA CAGCGTCATA TACTCAGAGA AGCTCAGCGC ACAGCCAAGA
  TCACACAGCA AGCTGCTGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss37789499	NES09129977	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs27590679					SNP	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37789499	NES09129977	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140218259 () rs orientation: forward

Symbol	Name	Function Class
Rr603445	regulatory region 603445	718 bp proximal