rs27590656 SNP Detail

Summary

• ID
  rs27590656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140226082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAC CAGTGCATCC CATCCAGATT
  R
  CAACCAAGAT GGCCACCTCC ACACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37789476	NES09129799	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A		A		A	A	A	G
ss45599324	mCV24754963	ABI	CRAMUS_MOUSE	f	SNP		A	A			A		G
ss147701949	ENSMUSSNP5389670	ENSEMBL	ENSEMBL_Sanger	f	SNP			A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27590656					SNP	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37789476	NES09129799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140226082 () rs orientation: forward

Symbol	Name	Function Class
Rr603446	regulatory region 603446	1285 bp distal
Rr603447	regulatory region 603447	928 bp proximal