rs27590651 SNP Detail

Summary

• ID
  rs27590651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140227352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTAGTGT GGATCTGAGG
  ATGGTTCCGG ATGGGTGGCC AGACCAGTTA CAAAGGATAG GGAGTGACTC CTGCCTATTG
  ATTAACAGCA GCCACCGGAA GATTGCACGG CAGAGTCTGG AGGAGGGATG GTCACGTGAT
  CCGTTTATCC CAACAGTCTT CTGGGAAGAT TGCTGACAAG TGATTTCTCT AACCAGCCTT
  R
  CATTAAACGA CACACACTAT TATCAGTGCA TTATTCAGGG TTCTCTAGAG TCACAGAATT
  TATGGAATGT CTCTCTATAT TGAGGGAATT TATTGTGACA ACTTACAGTC TGTAGTCCAA
  CTAATCCAAC CATGGGCAGC TCAGAATGGG AAGTCCAAGG ACCTAGTAGT TGCTCAGTCC
  CACGAGGCTA GGTGTTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37789471	NES09129771	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27590651					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37789471	NES09129771	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140227352 () rs orientation: forward

Symbol	Name	Function Class
Rr603447	regulatory region 603447	311 bp distal