rs27590650 SNP Detail

Summary

• ID
  rs27590650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140228199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCAACT CAAGGTCACA
  GGGAATGGAG CCAGAGTTTA AGGCCAAGGC TGGTTTACTC CAAGCCTATG TCTTTAACCA
  CTGAGCCACC TCAGTGTCTG AGCCTGGTTC CAGCCCTGAC ATTCTAGGTC TCCGGAGGCC
  CCACGGGCAT CGGGAACCTG CTTCCTCACT ATCTGGAAGT TTCTGCTGAT GCTGCGGGAA
  R
  TCTCACGCAC AAAGATGAAA GCCCCTTTGT TGGGAGAGGC AGCTCTGCTG ACAAAGAACA
  TGGTTCCTTT TGAGTGAGTC ATCCCAGAGG AGAACGGACA GGATGCAGGG AAGAGCCCCA
  CCCCCACCCA CAAGCCTGCA GATGGGAATC CACAGGCTCA TCTATAGGAA CAGACCCAAG
  GCCAAAGAAG CACAAAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37789470	NES09129756	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27590650					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37789470	NES09129756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140228199 () rs orientation: forward

Symbol	Name	Function Class
Rr603447	regulatory region 603447	1158 bp distal