rs27582452 SNP Detail

Summary

• ID
  rs27582452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141975920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGTGGA TGGATGGGGG
  TTGCTGAGGG GACCTGCCCT CTACACAAGG GCATGTTTCT TTCCTCAGTG CTAAGGTCAA
  GCCCAGGGTC TCACAAATTC TAAGTAAGCC CTCTGCTACA GCCTGCAATC TCAAACCTTG
  CACACTCGTG AGCAAAAAGT CAGCCACTCC TGATGCATGG CTGCCCCCAG TGGTCAAAAG
  K
  GGAACTGCAC CTCTCCTCTT AAAAGCTCTG TGTCCCGGGG CTCCTGCGGG CCATACCCCA
  GCTAGTGTTC AAGAAGAGAT AATGGTTACC ATGGCAGAGG AGAAGGCTTA AAGATCTGCA
  TACAGATGTC TCACACCCTC ACAAACAGCC AGGGGTGGTA GTGTAGTCGC AGGAAGACCC
  CGGGGATTGC TGCCAGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37782673	NES09127087	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27582452					SNP	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37782673	NES09127087	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141975920 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr377318	regulatory region 377318			732 bp upstream
Rr604044	regulatory region 604044			within coordinates
Rr604045	regulatory region 604045			686 bp proximal