rs27580929 SNP Detail

Summary

• ID
  rs27580929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135273379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCAGTG TGATTCCAAG
  GGTTAAATGA GATAGACTCA GTCTGATGTC TGTAACAGGA GTCGGGTGAA TGGAGGTTGC
  TACAATGAAC ATAATAAGAG AAGAACTTTG GTCTCCAGTG TTTTGGGGAC TTGAACTTGG
  GTCTTCTGAT GAGCGAGCCG CACTCCCCCC TCTATGCCAG GAGGGTCACT TGTGAGAAGA
  Y
  CCTTGCACCT CCTCCTACTC TCACCCAGGT TTCTGCAGGT GGAGAGGTGA CCATGACCTT
  GGCCTGACTT GGGGACTCTC CACCCTCACT GAGCATGCTC TCTGTAACTC CGCCAAGGCC
  AAGCCCAGCC TTGGTAGCTC TGAGTAGCCC CTGGAGGACT GAAGTGGCAC TTACCCTCGC
  TTGCATTTCT TGTAGACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779656	NES09142282	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580929					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779656	NES09142282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135273379 () rs orientation: forward

Symbol	Name	Function Class
Gm69137	predicted gene, 69137	within coordinates
Grhl3	grainyhead like transcription factor 3	Intron
Rr377247	regulatory region 377247	within coordinates
Rr602063	regulatory region 602063	852 bp distal
Rr602064	regulatory region 602064	397 bp distal
Rr602065	regulatory region 602065	1654 bp proximal
Tssr39621	transcription start site region 39621	826 bp downstream