rs27580922 SNP Detail

Summary

• ID
  rs27580922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135276405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCCCG TCGCAGGCTT
  AAGAAGGTCA AAGCCAGACG ACCAGACATA GAAGTCCATC CAACTCTTAA CTACTTAGAG
  AACCAAAGGC CTTTTCCAAC CCAATAAGCT TGTCACCCGT GCTAGCTGCC TTGGGAGAGC
  CATGTCCAAA CAGGGTCAAA GCCACAGATG TCCTTCTATC TCTGTGACAT CTGTCTGAGC
  Y
  CTGGAGTGTT CTCAGTCATC CCCAAATCTT GGCCTAAACA CTCTCCAAGG CCTTGGGTGG
  GGGGACTTCA GGAAAGTCAT GGGGTGGGTG GGGGCTTCTG AGAAGGCTCT GGGGGGCTTT
  GATGGACTCT GAGACTCTGT GTACCTCTCT GAAGGTCATC TTCCTTGGCT TGTTTAGAAG
  GAAGAGGCTC AAACTCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37779649	NES09142218	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27580922					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779649	NES09142218	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135276405 () rs orientation: forward

Symbol	Name	Function Class
Grhl3	grainyhead like transcription factor 3	Intron
Rr377247	regulatory region 377247	within coordinates
Rr602065	regulatory region 602065	450 bp distal