rs27580919 SNP Detail

Summary

• ID
  rs27580919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135277572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAATCT GTATCCCCAT
  CTCGGAGGCT TTTCTTTGCC TTTAGTTTTT TTACAAGCAG GTGTCTCACC AGAGATTTGC
  CAACTTTCCA TGTAAGGGAA GCCCATAAAA ACCCAGGTGG TTTCAATGTA AAGGGAGGAC
  CCAGGCCTGG CTCCAGGGAG CAGGGGAAAG ACAGGAGGCA ACGTGAGGGG TACAGAATTA
  R
  GAAAGGACAG GACCCCTGGC TGCTGTTCCT GTACCTGTCA GAGCTGCTGT GTCCTGCTGA
  GGGGACAACC TGCAACAGAG AGAATAGACA TTTCTGGTCA GGGACAAGAG CGGCCTAGGA
  AGGAAGGGGG TGGGTATTAC GCTAGAGTCC CCTGTGTTCT GCACTGAGGG CTCCCTAAGT
  GAGTTGGGGT GAACCGTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779646	NES09142070	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580919					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779646	NES09142070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135277572 () rs orientation: forward

Symbol	Name	Function Class
Grhl3	grainyhead like transcription factor 3	Intron
Rr377247	regulatory region 377247	412 bp downstream
Rr602065	regulatory region 602065	1617 bp distal