rs27580777 SNP Detail

Summary

• ID
  rs27580777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135298973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCACAC ACACTCAAGC
  ATGCCCACAA CATGTTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCACACACA
  CACACACACA CACACACACA CACACACACA CACTCACAGG CAACCTCAGA CTCCCCAGTT
  CTCAGAGTGG CTGAGCCCCC AGGTCAATCA CTGTAATCTC CAATGGTAGC TTCAAAGTTG
  R
  CCTGCATTAC TCAGCAGGCA CAGGCTTTCC TGAACGGAGA AGCCTCTTCT GTCAGCCCAT
  CCGACTTCCA ACCCAAACCA TTCAGGACAC TAGCAGAAAA CCTGTTCCGT AAGCCAGCTT
  CTCCATAGCC CCTGAGGAGA AACCTGAAAA GATTCTCTCT GCAGCCTCCG CAGGCAGCTG
  TAATTGGCAT GCGTGAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779504	NES09141345	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580777					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779504	NES09141345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135298973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15075	CpG island 15075	1068 bp distal
Cpgi15076	CpG island 15076	1562 bp proximal
Gm30888	predicted gene, 30888	1932 bp upstream
Grhl3	grainyhead like transcription factor 3	Intron
Rr367747	regulatory region 367747	625 bp downstream
Rr398595	regulatory region 398595	1186 bp downstream
Rr602070	regulatory region 602070	130 bp distal
Rr602071	regulatory region 602071	1442 bp proximal
Rr602072	regulatory region 602072	1958 bp proximal
Tssr43996	transcription start site region 43996	1870 bp downstream
Tssr43997	transcription start site region 43997	1961 bp downstream