rs27580774 SNP Detail

Summary

• ID
  rs27580774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135299323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTCTCTC TGCAGCCTCC
  GCAGGCAGCT GTAATTGGCA TGCGTGAGTG TGCTGGAGAC GTGTGTCTCA AGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTAAAGCAT AGAAAAATAA AAAGCAAGAA
  AGCTTCAGAA ATGCCCAATT ATTAATGTCT CCACAAAGGG AGAAAGGCAT TATTAGCATG
  Y
  TCCCTAACAG GCTTTAAATC AATCACTGTC ATAAAACTGA ACCCTGTAAG GACTGCCACT
  TGGTCACAGC ACGCACAGTC CAGGAGATGC AGGCTTGGGT CACTCAGATA ATAAGTTCAG
  GGGTTGGGGC TTGAATCTGG GCCCTAACAC TGTGTTTCTA TTTTTACTTT AATTGGGGTT
  CAACTGTCAA AACAGTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779501	NES09141348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580774					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779501	NES09141348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135299323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15075	CpG island 15075	1418 bp distal
Cpgi15076	CpG island 15076	1212 bp proximal
Gm30888	predicted gene, 30888	1582 bp upstream
Grhl3	grainyhead like transcription factor 3	Intron
Rr367747	regulatory region 367747	975 bp downstream
Rr398595	regulatory region 398595	1536 bp downstream
Rr602070	regulatory region 602070	480 bp distal
Rr602071	regulatory region 602071	1092 bp proximal
Rr602072	regulatory region 602072	1608 bp proximal
Tssr43996	transcription start site region 43996	1520 bp downstream
Tssr43997	transcription start site region 43997	1611 bp downstream