rs27580764 SNP Detail

Summary

• ID
  rs27580764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135300308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAAATT TCCAAATCAG
  GAAAATGAAG CTCAGATAAG TCCAACGACT TTTTAAGAAT GAACAGCGGA GGAGAGACGG
  AGCCTGGGTT TGAACCTAAG GAAAGCCACT ACAGAGCCCA TGTATACAGC CATTACACTA
  TAGTAGCCAG ATCGCTTGGG ACTGTTCCAA CTCAACATAA AGGACCTTTA GAGAAACTCA
  R
  CTCTTTGCAT AAGACAGCTC TGAGAACCAC CTCCAAGACG TTCCCTTTGG CAAGAGGAGA
  GAAAGCTTCC CTGGGGCGGG AGTGTCTCTG ATTTCCAAGG CACCTCCAGA GTATCAAAAA
  GCGATGCCAA GATTCACGGT TTCAGGCAGC CCGGGTGTTT GCCTTCCTCG AAACTGCTCA
  GCACAGAGAG AAAGAAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779491	NES09141322	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580764					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779491	NES09141322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135300308 () rs orientation: forward

Symbol	Name	Function Class
Gm30888	predicted gene, 30888	597 bp upstream
Grhl3	grainyhead like transcription factor 3	Intron
Rr367747	regulatory region 367747	1960 bp downstream
Rr602070	regulatory region 602070	1465 bp distal
Rr602071	regulatory region 602071	107 bp proximal
Rr602072	regulatory region 602072	623 bp proximal
Rr602073	regulatory region 602073	1112 bp proximal
Tssr43996	transcription start site region 43996	535 bp downstream
Tssr43997	transcription start site region 43997	626 bp downstream