rs27580760 SNP Detail

Summary

• ID
  rs27580760
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135301540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAAGTGA TTTCTTCCTA
  TTCTCCCAGT AACCAGCTAG GAAGGACTTT CTGTCAACTC TCCCTTCCAC CCCAACCAAC
  CCCATGCCCT CTACAGGTGA TCGAGGAAAT GTAGGTTGGA GAGGCAGGGT GCCTTGCCTA
  AGGGTGAGAG CCAGTGTCAG AGACCCGTTC AGTCATCTGG GAGACTAGCT ACTCCTTGAG
  W
  TGAAGTTGGT GGCCTCAGTT GACAGGGGAC ATTTACTAAG TACCGAGTGT GCAAGGTCTC
  CTCGCTCTGG GTTCTGGGGC AATAGCGGGG AAAGAAAATG CTGGTTTCTA TTCAGGAGGA
  GCCCCCCCTC CCCCAATGTG CATGAGTGTG TGTGTGTGTG TGTGTGTGTG TGTGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779487	NES09141326	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580760					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779487	NES09141326	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135301540 () rs orientation: forward

Symbol	Name	Function Class
Gm30888	predicted gene, 30888	within coordinates
Grhl3	grainyhead like transcription factor 3	599 bp upstream
Rr602071	regulatory region 602071	625 bp distal
Rr602072	regulatory region 602072	109 bp distal
Rr602073	regulatory region 602073	99 bp distal
Tssr43996	transcription start site region 43996	677 bp upstream
Tssr43997	transcription start site region 43997	586 bp upstream