rs27580757 SNP Detail

Summary

• ID
  rs27580757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135302629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGACATC CAGCCCTCAG
  GTTTCACATG GCTTTATTCT GTTCCCTGCA AAGCCCTTCC GGATTTTCTC ACATCATCAG
  GTGTCTATCT CCCTTCCCTC TGGAACGTGA GTTCCGTAGG AGCAAGAGGC CTTGTCTGCC
  TTGGTTACTC TCCAGCACTG GCTTAGGTGT CTGGCTCCCA GTAGGTGCTG TGAATGTTGC
  R
  TAGATCAGGT ATCGTGCCAA GCCTTCTTTA TGCATCATGT CAATACCCAA AGTGAGTCAG
  GCACTTTGCT ATCATCCCGT GAGATGAGGG GACCGGGATG CAGATCACTC ACTATAGCTG
  AAGGCAGCGG CAATGTGAGC AGTGACTGGC TCTGAGCGAT CGCTTACAGC AGTCACGGTG
  CTGAGAAGAA CTGCAGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779484	NES09141246	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580757					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779484	NES09141246	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135302629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15076	CpG island 15076	1604 bp distal
Gm30888	predicted gene, 30888	within coordinates
Grhl3	grainyhead like transcription factor 3	1688 bp upstream
Rr377248	regulatory region 377248	1486 bp upstream
Rr602071	regulatory region 602071	1714 bp distal
Rr602072	regulatory region 602072	1198 bp distal
Rr602073	regulatory region 602073	1188 bp distal
Tssr43996	transcription start site region 43996	1766 bp upstream
Tssr43997	transcription start site region 43997	1675 bp upstream