rs27580754 SNP Detail

Summary

• ID
  rs27580754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135303181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTTCG GGTGGCATGT
  CTGTGCTCGC TGGGCTTTAT AAACGGGTCC TCTCCCTCTC TGGGTCCTGG CTCTGTGCTC
  ACAGCCATTG TTAGAGATCA TCAGAGGGTC TCTGTGACTC CTTACACAGG AAGCCTCCAG
  AAGGTGCCCC GATAGGTACC ACGGATGCAA GGAGCAGGTG TGCAGGGTTC CGGGAGTCCT
  Y
  CCAGCCATGT GACAAGGCCA ACACAGACCT TTGCCACCAC AGCTCAAAGA GGCCAAGATT
  TTGAAGTGAT ATTGCCCAAG TCTGGCTGCC TGCCTTTCCT AGTCCTTGGG GGTATGATGC
  AGCCCAGGGC CAGGGGAGGC TGGCATCACT GCCCTTGCAT GGACATCCCA GCTCTTGGTT
  GCTCTAAGAA ATTATAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37779481	NES09141249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580754					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37779481	NES09141249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135303181 () rs orientation: forward

Symbol	Name	Function Class
Gm30888	predicted gene, 30888	within coordinates
Rr377248	regulatory region 377248	934 bp upstream
Rr602072	regulatory region 602072	1750 bp distal
Rr602073	regulatory region 602073	1740 bp distal