rs27580081 SNP Detail

Summary

• ID
  rs27580081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141302731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGTGGC CTCAGGCGAG
  AGGGACCCTG GCACAGGGCC ATGGGCAAGT TCAGCGCTCC CCAGCAACTC CTGATGGTCC
  TTTGTTCAGA GTCCAAGTTC CCAGGTCTCA TTCTTGAATT TCCGGGCATC CCCTCCAAAC
  AGGTGACAGT TTGGGCCAGC GACTGGCTTA ATCTCCGGCC GCAGGTCTCC TTTCGAGAGG
  Y
  CGCATTCCTG AGACAGGTGG AAAAGTTTCA TGACCACGTC ACTCTTTTGG GATGTTTTCT
  CTCTCCGAAA TATGAGCATT GAGAACCCTA CGCGTTGAGA AGCTGGTGAG AAGCCAGAGA
  ACCTTGGCTC CGGGTATCAA CTCGCTGGCT CATGCTGCCC CCTAGCGGCT GAACGCCACA
  TCTGCCTTGA CGCAGCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785712	NES09123744	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580081					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785712	NES09123744	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141302731 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	642 bp downstream
Gm68503	predicted gene, 68503	246 bp upstream
Rr377309	regulatory region 377309	1443 bp downstream
Rr603811	regulatory region 603811	1239 bp distal
Rr603812	regulatory region 603812	257 bp distal
Rr603813	regulatory region 603813	within coordinates
Rr603814	regulatory region 603814	152 bp proximal
Rr603815	regulatory region 603815	1639 bp proximal
Tssr40086	transcription start site region 40086	1894 bp downstream
Tssr44332	transcription start site region 44332	1385 bp downstream