rs27580078 SNP Detail

Summary

• ID
  rs27580078
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141302860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCCAAA CAGGTGACAG
  TTTGGGCCAG CGACTGGCTT AATCTCCGGC CGCAGGTCTC CTTTCGAGAG GCCGCATTCC
  TGAGACAGGT GGAAAAGTTT CATGACCACG TCACTCTTTT GGGATGTTTT CTCTCTCCGA
  AATATGAGCA TTGAGAACCC TACGCGTTGA GAAGCTGGTG AGAAGCCAGA GAACCTTGGC
  K
  CCGGGTATCA ACTCGCTGGC TCATGCTGCC CCCTAGCGGC TGAACGCCAC ATCTGCCTTG
  ACGCAGCCCA GAACCTGCAA CTTGCAAACT ACTGCCTAGT TTCCCAGGAC CCCTAAGCGG
  GGTAATGCAT GTCCCCTCAC AGGAGTCCCA ATGCACGTCA CCACTTTATC AGCTTCCCTT
  TAATTAATTC ATATATGTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785709	NES09123747	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	T	G	T	T	T		G	T	T	T		T
ss321388162	CHEV_4_141131464	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27580078					SNP	T	T	G	G	T	G	T	T	T	G	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785709	NES09123747	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141302860 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	513 bp downstream
Gm68503	predicted gene, 68503	375 bp upstream
Rr377309	regulatory region 377309	1572 bp downstream
Rr603811	regulatory region 603811	1368 bp distal
Rr603812	regulatory region 603812	386 bp distal
Rr603813	regulatory region 603813	within coordinates
Rr603814	regulatory region 603814	23 bp proximal
Rr603815	regulatory region 603815	1510 bp proximal
Tssr44332	transcription start site region 44332	1256 bp downstream