rs27580032 SNP Detail

Summary

• ID
  rs27580032
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135900897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT TCCTGTTCAG ATGGACTGTG
  W
  CCTCGCGAGT GAGAGATGTG TTGTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37777666	NES09146557	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	A	T		A	A	T		T	A	T	T		T
ss45706184	mCV22914095	ABI	CRAMUS_MOUSE	f	SNP		T					A	A
ss147560429	ENSMUSSNP2452615	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321354372	CHEV_4_135729501	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27580032					SNP	T	T	T	A	A	T	A	A	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777666	NES09146557	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135900897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	169 bp distal
E2f2	E2F transcription factor 2	Intron
Rr367754	regulatory region 367754	1132 bp downstream
Rr398609	regulatory region 398609	1001 bp upstream
Rr602302	regulatory region 602302	1182 bp distal
Tssr39670	transcription start site region 39670	1298 bp downstream
Tssr39671	transcription start site region 39671	1191 bp downstream
Tssr39672	transcription start site region 39672	1159 bp downstream
Tssr39673	transcription start site region 39673	1144 bp downstream
Tssr39674	transcription start site region 39674	1007 bp downstream
Tssr39675	transcription start site region 39675	833 bp downstream
Tssr39676	transcription start site region 39676	726 bp downstream
Tssr39677	transcription start site region 39677	630 bp downstream
Tssr39678	transcription start site region 39678	408 bp downstream
Tssr44029	transcription start site region 44029	1263 bp upstream
Tssr44030	transcription start site region 44030	982 bp upstream
Tssr44031	transcription start site region 44031	539 bp upstream