rs27580031 SNP Detail

Summary

• ID
  rs27580031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135900903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTGGTG ACTTTAAATC
  CGCATAGGTC TCCCAGGTCT CTGGTCCAGC CTGGTATCTG GACCAGAGTT GTCTAGCCAG
  CTCCTTCTCA AGTGTTGTCC TCAGGTCCTC CCCACAGCCT GCTCATCGTC CGAAATAGCC
  AGTAGCAATG CAAATGTAGT CCGTCTCTTG GGTTTCCTGT TCAGATGGAC TGTGACCTCG
  Y
  GAGTGAGAGA TGTGTTGTCA GGGAAGGCCT GGTGTGGTGG CGTTTGGGCT GTAGTACAGG
  GTTTGTGGGA ATGGATGAGA AAGGGCCTGA GGGAGTTAGA GGGAGGGTTG GGGTGGCTGG
  TTTCAGCTCT GGTCTTCACT GTGTATATTT GGATGTCAGG GCCTCTGTTT CCTCTTCTTA
  AAAAAAAAAA GTTTTAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777665	NES09146558	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580031					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777665	NES09146558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135900903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	175 bp distal
E2f2	E2F transcription factor 2	Intron
Rr367754	regulatory region 367754	1138 bp downstream
Rr398609	regulatory region 398609	995 bp upstream
Rr602302	regulatory region 602302	1188 bp distal
Tssr39670	transcription start site region 39670	1304 bp downstream
Tssr39671	transcription start site region 39671	1197 bp downstream
Tssr39672	transcription start site region 39672	1165 bp downstream
Tssr39673	transcription start site region 39673	1150 bp downstream
Tssr39674	transcription start site region 39674	1013 bp downstream
Tssr39675	transcription start site region 39675	839 bp downstream
Tssr39676	transcription start site region 39676	732 bp downstream
Tssr39677	transcription start site region 39677	636 bp downstream
Tssr39678	transcription start site region 39678	414 bp downstream
Tssr44029	transcription start site region 44029	1269 bp upstream
Tssr44030	transcription start site region 44030	988 bp upstream
Tssr44031	transcription start site region 44031	545 bp upstream