rs27580030 SNP Detail

Summary

• ID
  rs27580030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135901435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCTCTA CCCACTGAGC
  CATCTCGCCA GCCCCACCTT TCCTCTTCTA GAAAATATAT CTTCCTTGGC TTGTCTCCTC
  TGTTAGTTCC AGGTTTGGAA GCAGGTGTCA AGGAGGGGAG ATGGTATTTG TAGGGTATGG
  TAAGTCTAGG GACAGGGATA AGACCACCCT GTGTCCCCAG GGTATTTTGT CCGACCTGTG
  R
  CTCTGTCTTT TCTTTCTCCA CCCCTGGGGC AGGCTCAGAG CTCAGTGGTC ACCTCTCTGG
  CTCTAGGCAG AGCCAGCCTC ATTTTCTGCC TTTGGAGTCA AGCTTTAGTT TTACCTCCCA
  TGATCCCTTT CCTGGGAGTG CAGGAAGTGG CATGGCTGTG TTGTCATGCC CATTTTACAG
  GGCAAGAAAC TGAGGATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37777664	NES09146541	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27580030					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777664	NES09146541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135901435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	707 bp distal
E2f2	E2F transcription factor 2	Intron
Rr367754	regulatory region 367754	1670 bp downstream
Rr398609	regulatory region 398609	463 bp upstream
Rr602302	regulatory region 602302	1720 bp distal
Tssr39670	transcription start site region 39670	1836 bp downstream
Tssr39671	transcription start site region 39671	1729 bp downstream
Tssr39672	transcription start site region 39672	1697 bp downstream
Tssr39673	transcription start site region 39673	1682 bp downstream
Tssr39674	transcription start site region 39674	1545 bp downstream
Tssr39675	transcription start site region 39675	1371 bp downstream
Tssr39676	transcription start site region 39676	1264 bp downstream
Tssr39677	transcription start site region 39677	1168 bp downstream
Tssr39678	transcription start site region 39678	946 bp downstream
Tssr44029	transcription start site region 44029	1801 bp upstream
Tssr44030	transcription start site region 44030	1520 bp upstream
Tssr44031	transcription start site region 44031	1077 bp upstream