rs27579392 SNP Detail

Summary

• ID
  rs27579392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135494409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAACCAA AGTAGATCAC
  GATTCAGATC TCAGCAAGAC AGCAACAGGT TAGGTTGGTG GGGGAGAGGG GGGTTGTTGT
  TTTGTTTTGT TTTGTTGTTG TTGTGGTTGT TTGGGGTTTT GTTGTTGTTG TTTTTAACTT
  AAAGCACACA AGTGCTAAGT AGCTGGAGAT GGCAAACAGG TAGGCGGATC ACAACCAAGA
  R
  TGACATCTGA AGGAAGTTGG CCTCCAGACT GGCCAGTTCC AGCTGGCACA CTTTCAAAGT
  CATGCACTGG ACAGTGCGCT GGGCAAAGGG AGCTGTGGAG ACCAAGGCAG TGCCACCTGC
  CAGTGGCTGG CCCCAGTAAG AGCTCTGCTT CCAACTCAGA TCTGAGCTAA GTCGGTGAAG
  CAGGGGTGGA TACTGGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778613	NES09158042	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27579392					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778613	NES09158042	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135494409 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myom3	myomesin family, member 3			Intron
				Noncoding-Transcript-Variant
Rr602132	regulatory region 602132			1841 bp proximal
Rr602133	regulatory region 602133			1935 bp proximal