rs27579389 SNP Detail

Summary

• ID
  rs27579389
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135494535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTTTTA ACTTAAAGCA
  CACAAGTGCT AAGTAGCTGG AGATGGCAAA CAGGTAGGCG GATCACAACC AAGAATGACA
  TCTGAAGGAA GTTGGCCTCC AGACTGGCCA GTTCCAGCTG GCACACTTTC AAAGTCATGC
  ACTGGACAGT GCGCTGGGCA AAGGGAGCTG TGGAGACCAA GGCAGTGCCA CCTGCCAGTG
  K
  CTGGCCCCAG TAAGAGCTCT GCTTCCAACT CAGATCTGAG CTAAGTCGGT GAAGCAGGGG
  TGGATACTGG GGGAGGGGGG CTGGTTTCTG AGCCAACCAG CAAGGCCAGC ACTACAGAGC
  CAAGGATTCC TGAAATGGGA GAAGCCAAGG CCAGACCCAC TGGCTGGTGA CCCCTGAGGT
  TCCTGGCTTG GTGATTATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778610	NES09158045	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	G	G	G	G
ss45683426	mCV22670695	ABI	CRAMUS_MOUSE	f	SNP		T	G					G
ss147550440	ENSMUSSNP779530	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27579389					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778610	NES09158045	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135494535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myom3	myomesin family, member 3			Intron
				Noncoding-Transcript-Variant
Rr602132	regulatory region 602132			1715 bp proximal
Rr602133	regulatory region 602133			1809 bp proximal