rs27579383 SNP Detail

Summary

• ID
  rs27579383
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135496002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAATAA TAAGTATATA
  GATAGACAGG CTGGCAGACA GATAGATAGA AGGAATAGAA TATCAATACA TCCCAGGAGA
  TTAACCATAG AGGCATAGGC CTGTGATTCC TGGCTTCTGG AGGCTGAGGC AGGAAGGATA
  CAAGTCTGAG ACTGATCTGG GCTACCCAGT GAGACGCTAT CTCAAAGAGC AATGGAAAAT
  K
  TAGGCAAATA GTAAGTCATT TTCCTGAGGC CTCTCTGGCT GGAGGGGCAG GCAGGATGAG
  GCTTAGGGCC TGGCAGCTGC TGCGCCTTGA GAGGACGGCA GGGCCTGGGC AGCCCAGCCT
  GAGGAGTCTG GAATGTTTCT GACAGGTCTG GGCTAGGGTC CTGGTCCTCA GAGCCTGGAG
  AGATGTGTGC CCAGATTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37778604	NES09157958	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27579383					SNP	G	G	G	G	G	G	G	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778604	NES09157958	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135496002 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myom3	myomesin family, member 3			Intron
				Noncoding-Transcript-Variant
Rr602132	regulatory region 602132			248 bp proximal
Rr602133	regulatory region 602133			342 bp proximal
Rr602134	regulatory region 602134			663 bp proximal