rs27579376 SNP Detail

Summary

• ID
  rs27579376
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135496407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCCCCA CAGGAGACTT
  AGCTGGGCCC CTTTCCTAAA TAGGGACAGA GTGGATGTGC CTCTGTTCCC TGGCCATGGG
  GATAAATAGG GCACCCAGAG AGACAGCCCA GGTCCAAGAA AGGCTGGTCC TGAGGCTGGA
  GCGCCCTCTG TCTGCAAGAA GGACACCTTC CTTTTCAACG TCAACTGGCT GTGCTAGAGC
  S
  CGAAGAGGTA TCTCTGAATT CACCCCTGAG ACACACACAC ACACACGCGC GCGCGCATGC
  ACCCATCCAC CCAACACCAG TGTACAGGTT CTATACCCAG TAGTCCTAAG TTTACTGGGA
  CACAGGGCAT GTCCAGACAG AACACTGGCC CCTGGCAGCT CTGCCCACAG CATCTGAGCC
  TTCTTACAGC CACAGGACAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37778597	NES09157966	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27579376					SNP	C	C	C	C	C	C	C	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37778597	NES09157966	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135496407 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myom3	myomesin family, member 3			Intron
				Noncoding-Transcript-Variant
Rr602132	regulatory region 602132			within coordinates
Rr602133	regulatory region 602133			42 bp distal
Rr602134	regulatory region 602134			258 bp proximal