rs27578234 SNP Detail

Summary

• ID
  rs27578234
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133999958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCTGAA GTATAAAAAT
  TGTATGTGTT AAAATCAGGA GCACTTGCCT TGCACCTGTG AGGACCAGGG AGTGATGCCT
  AGAACTGAAA AGTCACCTGC AGTTTGCTGA GTTGACACAA TGTCACCTAA GGCAAAAACC
  AAAATCATGT GGGTTCACTA GAATCCCTGG GTGCATGGCC TCTTTAAGTT AGGCGTGCTA
  S
  CAGAGGCATG CTGGGCACCC CAACACAGGA TCCCTCAACT TAGGGTCCAT GACAATGGAC
  TCCTGATATT TGTACTCCCT TGACATTATA GGCAAACATT TTCCTGAGGA AAGCAGGCAG
  TGCCTTCACC AGATTCTGCC AAGGTGGGGA CAATCAAAGC TATATCTGGA GAGGGCTCAG
  TGATTCTTTC CTTCCTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762279	NES09162678	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	G	G	C	C	C	C
ss45629205	mCV22576274	ABI	CRAMUS_MOUSE	f	SNP		C	C					G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27578234					SNP	C	C	C	C	C	C	C	G	C	C	C	G	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762279	NES09162678	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133999958 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	982 bp upstream
Rr398573	regulatory region 398573	713 bp upstream
Rr601619	regulatory region 601619	492 bp proximal
Rr601620	regulatory region 601620	811 bp proximal
Rr601621	regulatory region 601621	993 bp proximal
Rr601622	regulatory region 601622	1003 bp proximal