rs27578232 SNP Detail

Summary

• ID
  rs27578232
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134000200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGGGGAC AATCAAAGCT ATATCTGGAG AGGGCTCAGT
  GATTCTTTCC TTCCTCCTCT CACGGGAATC CTTGCGGTGT GTTTTGATGA CGTCGTTGTT
  S
  TTGTTTTATG GGAAAGGGTC ACACTATGCA GCCCTGGCTG ACCAGAACTC TGCTCTCTTA
  GAAACTTCAA AGACACGAGC AAAGATGACG AACTCGACAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37762277	NES09162680	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27578232					SNP	C	G	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762277	NES09162680	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134000200 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	740 bp upstream
Rr398573	regulatory region 398573	471 bp upstream
Rr601619	regulatory region 601619	250 bp proximal
Rr601620	regulatory region 601620	569 bp proximal
Rr601621	regulatory region 601621	751 bp proximal
Rr601622	regulatory region 601622	761 bp proximal