rs27578230 SNP Detail

Summary

• ID
  rs27578230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134000366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT GAGGCTCAAA TGAATGGATG
  R
  CCATTTATGG AAGGACACAT TTTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37762275	NES09162682	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	G	A		G	G		G
ss45597799	mCV22576164	ABI	CRAMUS_MOUSE	f	SNP		G	G				A	G
ss147522834	ENSMUSSNP3322281	ENSEMBL	ENSEMBL_Sanger	f	SNP			G					G
ss321346314	CHEV_4_133828970	CHEVERUD	SCREENING_POP	f	SNP											G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27578230					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762275	NES09162682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134000366 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	574 bp upstream
Pdik1l	PDLIM1 interacting kinase 1 like	1947 bp downstream
Rr398573	regulatory region 398573	305 bp upstream
Rr601619	regulatory region 601619	84 bp proximal
Rr601620	regulatory region 601620	403 bp proximal
Rr601621	regulatory region 601621	585 bp proximal
Rr601622	regulatory region 601622	595 bp proximal