rs27578229 SNP Detail

Summary

• ID
  rs27578229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134000386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG ACCATTTATG GAAGGACACA
  Y
  TTTACTTAGG TGGCTATTTG CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37762274	NES09162683	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	T		T	C	C		C
ss45645262	mCV22576163	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss147522839	ENSMUSSNP450432	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss321346315	CHEV_4_133828990	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27578229					SNP	C	C	C	C	C	C	C	T	T	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762274	NES09162683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134000386 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	554 bp upstream
Pdik1l	PDLIM1 interacting kinase 1 like	1927 bp downstream
Rr398573	regulatory region 398573	285 bp upstream
Rr601619	regulatory region 601619	64 bp proximal
Rr601620	regulatory region 601620	383 bp proximal
Rr601621	regulatory region 601621	565 bp proximal
Rr601622	regulatory region 601622	575 bp proximal