rs27578221 SNP Detail

Summary

• ID
  rs27578221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134001685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGCTAAA CCCTACTTCT TTACAAGTCA TTGCCTCATG
  TTATCAATTG AAATTGCATC CACTTAGTAC ATTTAATAGA AATAGGATAA ATGGAAAAAA
  R
  AATCTGTGGG TTAGAGAGAT GGTTCAGTGG TTAAGACCTC TTGGAGGACC TTCGGTTCAA
  TTCTGAAGCA TCTACAAGGA GGTTCACATG GAACTCCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37762266	NES09162617	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27578221					SNP	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762266	NES09162617	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134001685 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	within coordinates
Pdik1l	PDLIM1 interacting kinase 1 like	628 bp downstream
Rr398573	regulatory region 398573	713 bp downstream
Rr601619	regulatory region 601619	735 bp distal
Rr601620	regulatory region 601620	895 bp distal
Rr601621	regulatory region 601621	279 bp distal
Rr601622	regulatory region 601622	703 bp distal