rs27578218 SNP Detail

Summary

• ID
  rs27578218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134002951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCC AAAATTCCCA AGTATCACTC
  R
  TCTTTTATGT CTTATATGCG TCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37762263	NES09162604	PERLEGEN	MM_PANEL2	f	SNP			A	G		A	A		A
ss147522924	ENSMUSSNP2617295	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321346334	CHEV_4_133831555	CHEVERUD	SCREENING_POP	f	SNP					A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27578218					SNP	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762263	NES09162604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134002951 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	within coordinates
Pdik1l	PDLIM1 interacting kinase 1 like	mRNA-UTR
Rr398573	regulatory region 398573	1979 bp downstream
Rr601621	regulatory region 601621	1545 bp distal
Rr601622	regulatory region 601622	1969 bp distal